slurm
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Adam Carlson | Campus Champions | ||
| Andrew Monaghan | ACCESS CSSN | ||
| Andrew Sherman | ACCESS CSSN, Campus Champions, CAREERS | ||
| Devin Bayly | ACCESS CSSN, Campus Champions, CCMNet | ||
| Bill Conn | Campus Champions, Great Plains | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Brandon Biggs | OnDemand | ||
| Brian Haymore | Campus Champions, RMACC, CCMNet | ||
| Kevin Bryan | Campus Champions | ||
| Benjamin Meyers | Campus Champions | ||
| Christina Divoll | Campus Champions, ACCESS CSSN | ||
| Craig Gross | Campus Champions, CCMNet | ||
| Charles Forsyth | Campus Champions | ||
| Chris Carothers | CAREERS | ||
| Chad Julius | Campus Champions, Great Plains | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Craig Earley | RMACC | ||
| Chris Reidy | Campus Champions, CCMNet | ||
| Cesar Sul | ACCESS CSSN, Campus Champions | ||
| Bala Desinghu | ACCESS CSSN, Campus Champions, CAREERS, Northeast | ||
| Daniel Benedict | CCMNet | ||
| David Carlson | ACCESS CSSN, OnDemand | ||
| Daniel Morales | Campus Champions | ||
| Deborah Penchoff | Campus Champions | ||
| David Liu | CCMNet | ||
| David Ryglicki | |||
| Eden Furtak-Cole | Campus Champions | ||
| Feseha Abebe-Akele | CCMNet | ||
| Yu-Chieh Chi | Campus Champions | ||
| Jeff Dusenberry | Campus Champions, Northeast | ||
| Jeff Falgout | Campus Champions, RMACC | ||
| Juanjo Garcia Mesa | Campus Champions, CCMNet, ACCESS CSSN | ||
| Jack Garmer | Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jason Simms | ACCESS CSSN, Campus Champions, CCMNet | ||
| Juan Vanegas | Northeast | ||
| Jeffrey Weekley | Campus Champions | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Kali McLennan | Campus Champions, Great Plains | ||
| Katia Bulekova | ACCESS CSSN, Campus Champions, CAREERS, CCMNet, Northeast | ||
| Keri Toksu | Northeast, Campus Champions | ||
| Katherine Nelson | Campus Champions, CAREERS, ACCESS CSSN | ||
| Od Odbadrakh | ACCESS CSSN | ||
| Marina Kraeva | Campus Champions | ||
| Kenneth Bundy | CAREERS | ||
| Lakitha Wijeratne | TRECIS | ||
| Lonnie Crosby | Campus Champions, ACCESS CSSN | ||
| Mohsen Ahmadkhani | CCMNet, ACCESS CSSN | ||
| Mattie Niznik | Campus Champions | ||
| Andrew Monaghan | RMACC, Campus Champions | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Michael Schnaitter | ACCESS CSSN | ||
| Nandan Tandon | CCMNet, Campus Champions | ||
| Neil McGlohon | CAREERS | ||
| Nannan Shan | CCMNet, ACCESS CSSN | ||
| Justin Oelgoetz | Campus Champions, CCMNet | ||
| Nicholas Panchy | Campus Champions | ||
| Lev Gorenstein | CCMNet | ||
| Paul Rulis | Campus Champions | ||
| Rebecca Belshe | Campus Champions, CCMNet | ||
| Mike Renfro | Campus Champions, CCMNet | ||
| Ron Rahaman | Campus Champions | ||
| Sean Anderson | ACCESS CSSN, Campus Champions, CCMNet, OnDemand | ||
| Shawn Doughty | Campus Champions, Northeast | ||
| Swabir Silayi | ACCESS CSSN, CCMNet, Campus Champions | ||
| Soham Pal | ACCESS CSSN, Campus Champions, CCMNet | ||
| Spencer Pruitt | Northeast | ||
| Shawn Sivy | Campus Champions, CAREERS | ||
| Sathish Srinivasan | ACCESS CSSN | ||
| Scott Yockel | Campus Champions, Northeast | ||
| Mohammad Al-Tahat | CAREERS, Campus Champions, CCMNet | ||
| Torey Battelle | Campus Champions, CCMNet | ||
| Tom Maiden | ACCESS CSSN | ||
| Timothy Middelkoop | ACCESS CSSN, Campus Champions, CCMNet, Great Plains | ||
| Thomas Pranzatelli | |||
| Xiaoge Wang | Campus Champions | ||
| William Lai | ACCESS CSSN |
Affinity Groups
There are no Affinity Groups associated with this topic. View All Affinity Groups.
Announcements
| Title | Date |
|---|---|
| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
Upcoming Events & Trainings
| Title | Date |
|---|---|
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| ACES: Charliecloud Containers for Scientific Workflows (Tutorial) | Learning | ACES, TAMU, scratch, lammps, tensorflow, open-ondemand, gpu, nfs, slurm, bash, training, python, containers | Beginner |
| AHPCC documentary | Docs | login, batch-jobs, slurm, bash, ssh, python, mpi | Beginner, Intermediate |
| AI/ML TechLab - Accelerating AI/ML Workflows on a Composable Cyberinfrastructure | Docs | ACES, documentation, TAMU, ai, visualization, deep-learning, machine-learning, neural-networks, login, authentication, composable-systems, gpu, nvidia, slurm, bash, modules, vim, anaconda, conda, programming, python, scikit-learn | Intermediate |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Brandon Biggs
Programs
OnDemand
Roles
mentor, researcher/educator, research computing facilitator, research software engineer, ci systems engineer, OnDemand
Expertise
Expertise
Expertise
People with Interest
Wirawan Purwanto
Old Dominion University
Programs
Campus Champions, Northeast, ACCESS CSSN
Roles
mentor, research computing facilitator, cssn
Interests
Martin Cuma
University of Utah
Programs
RMACC, Campus Champions
Roles
mentor, research computing facilitator
Interests
