mpi
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Anita Schwartz | Campus Champions | ||
| Andrew Sherman | ACCESS CSSN, Campus Champions, CAREERS | ||
| Brian Gregor | ACCESS CSSN, Northeast, Campus Champions | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Charles Forsyth | Campus Champions | ||
| Chris Carothers | CAREERS | ||
| Christopher Bl… | Campus Champions | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Daniel Benedict | CCMNet | ||
| Deborah Penchoff | Campus Champions | ||
| Daniel Howard | ACCESS CSSN, Campus Champions, CCMNet, RMACC | ||
| David Liu | CCMNet | ||
| Edwin Posada | Campus Champions | ||
| Feseha Abebe-Akele | CCMNet | ||
| Gaurav Khanna | Campus Champions, CAREERS, Northeast, CCMNet | ||
| Henry Neeman | Campus Champions | ||
| Iman Rahbari | Campus Champions, ACCESS CSSN, CCMNet | ||
| Yu-Chieh Chi | Campus Champions | ||
| Jeff Dusenberry | Campus Champions, Northeast | ||
| Jeho Park | CCMNet, Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jonathan Komperda | Campus Champions | ||
| Juan Vanegas | Northeast | ||
| Katherine Nelson | Campus Champions, CAREERS, ACCESS CSSN | ||
| Od Odbadrakh | ACCESS CSSN | ||
| Thomas Langford | Campus Champions, CAREERS | ||
| Lonnie Crosby | Campus Champions, ACCESS CSSN | ||
| Lisa Lowe | Campus Champions, ACCESS CSSN | ||
| Martin Cuma | RMACC, Campus Champions | ||
| Mohammadreza H… | Campus Champions | ||
| Mattie Niznik | Campus Champions | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Nicholas Danes | Campus Champions, MINES | ||
| Neil McGlohon | CAREERS | ||
| Jeffrey J. Nuc… | CAREERS, CCMNet | ||
| Justin Oelgoetz | Campus Champions, CCMNet | ||
| Paul Rulis | Campus Champions | ||
| Ron Rahaman | Campus Champions | ||
| Grant Scott | Great Plains | ||
| Xiaoqin Huang | ACCESS CSSN | ||
| Shaohao Chen | Northeast | ||
| Swabir Silayi | ACCESS CSSN, CCMNet, Campus Champions | ||
| Spencer Pruitt | Northeast | ||
| Shawn Sivy | Campus Champions, CAREERS | ||
| Seung Woo Son | Northeast | ||
| Mohammad Al-Tahat | CAREERS, Campus Champions, CCMNet | ||
| Tyler Burkett | Kentucky | ||
| Xiaoge Wang | Campus Champions | ||
| Wirawan Purwanto | Campus Champions, Northeast, ACCESS CSSN |
Affinity Groups
There are no Affinity Groups associated with this topic. View All Affinity Groups.
Announcements
| Title | Date |
|---|---|
| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
Upcoming Events & Trainings
| Title | Date |
|---|---|
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
| HPC & Data Science Summer Institute 2025 | 8/04/25 |
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| ACCESS HPC Workshop Series | Learning | deep-learning, machine-learning, neural-networks, big-data, tensorflow, gpu, training, openmpi, c, c++, fortran, openmp, programming, mpi, spark | Beginner, Intermediate |
| AHPCC documentary | Docs | login, batch-jobs, slurm, bash, ssh, python, mpi | Beginner, Intermediate |
| Benchmarking with a cross-platform open-source flow solver, PyFR | Tool | finite-element-analysis, benchmarking, parallelization, github, fluid-dynamics, openmpi, c++, cuda, mpi | Intermediate |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Thomas Langford
Yale University
Programs
Campus Champions, CAREERS
Roles
mentor, research computing facilitator
Expertise
Deborah Penchoff
University of Tennessee - Knoxville
Programs
Campus Champions
Roles
research computing facilitator
Expertise
Katherine Nelson
Yale University
Programs
Campus Champions, CAREERS, ACCESS CSSN
Roles
mentor, administrator, Masquerade, ExportPeople, research computing facilitator, steering committee, regional admin
Expertise
People with Interest
Xiaoqin Huang
Rice University
Programs
ACCESS CSSN
Roles
mentor, research computing facilitator, research software engineer, cssn
Interests
Eden Furtak-Cole
Desert Research Institute
Programs
Campus Champions
Roles
research computing facilitator
Interests
Juanjo Garcia Mesa
Arizona State University
Programs
Campus Champions, CCMNet, ACCESS CSSN
Roles
mentor, CampusChampionsAdmin, research computing facilitator, research software engineer, cssn, Affinity Group Leader, CCMNet
