optimization
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Aaron Jezghani | Campus Champions | ||
| Andrew Monaghan | ACCESS CSSN | ||
| Christopher Bl… | Campus Champions | ||
| Bala Desinghu | ACCESS CSSN, Campus Champions, CAREERS, Northeast | ||
| Daniel Benedict | CCMNet | ||
| Daniel Howard | ACCESS CSSN, Campus Champions, CCMNet, RMACC | ||
| David Liu | CCMNet | ||
| Darshan Sarojini | ACCESS CSSN | ||
| Edwin Posada | Campus Champions | ||
| Gil Speyer | ACCESS CSSN, RMACC, Campus Champions | ||
| Jeff Falgout | Campus Champions, RMACC | ||
| Jonathan Komperda | Campus Champions | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Jason Yalim | Campus Champions | ||
| Katia Bulekova | ACCESS CSSN, Campus Champions, CAREERS, CCMNet, Northeast | ||
| Mohsen Ahmadkhani | CCMNet, ACCESS CSSN | ||
| Mohammadreza H… | Campus Champions | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Maryam Taeb | |||
| Justin Oelgoetz | Campus Champions, CCMNet | ||
| Paul Rulis | Campus Champions | ||
| Rebecca Belshe | Campus Champions, CCMNet | ||
| Ron Rahaman | Campus Champions | ||
| Xiaoqin Huang | ACCESS CSSN | ||
| Liwen Shih | Campus Champions, ACCESS CSSN, CCMNet | ||
| Mohammad Al-Tahat | CAREERS, Campus Champions, CCMNet | ||
| Xiaoge Wang | Campus Champions |
Affinity Groups
| Logo | Name | Description | Tags | Join |
|---|---|---|---|---|
|
Structural Biology OOD Apps | This group is for researchers and support staff using structural biology tools like RELION, cryoSPARC, PHENIX, IMOD, and others through Open OnDemand. Whether you're optimizing workflows,… | Login to join |
Announcements
| Title | Date |
|---|---|
| TACC Summer Institute for Applied Parallel Programming | 05/16/25 |
Upcoming Events & Trainings
| Title | Date |
|---|---|
| Python for HPC | 9/09/25 |
| Python for HPC | 9/09/25 |
| Python for HPC | 9/09/25 |
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| Advanced Compilers: The Self-Guided Online Course | Learning | optimization, parallelization, training, compiling | Advanced |
| Advanced Mathematical Optimization Techniques | Learning | optimization, python | Beginner, Intermediate, Advanced |
| Fine-tuning LLMs with PEFT and LoRA | Video | faster, optimization, performance-tuning, tuning | Intermediate, Advanced |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Bala Desinghu
Harvard University
Programs
ACCESS CSSN, Campus Champions, CAREERS, Northeast
Roles
mentor, researcher/educator, research computing facilitator, cssn, Consultant
Expertise
Expertise
Expertise
People with Interest
Interests
Interests
