pytorch
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Devin Bayly | ACCESS CSSN, Campus Champions, CCMNet | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Bala Desinghu | ACCESS CSSN, Campus Champions, CAREERS, Northeast | ||
| Deborah Penchoff | Campus Champions | ||
| Elie Alhajjar | ACCESS CSSN, CCMNet | ||
| Yu-Chieh Chi | Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jeffrey Weekley | Campus Champions | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Od Odbadrakh | ACCESS CSSN | ||
| Kenneth Bundy | CAREERS | ||
| shuai liu | ACCESS CSSN | ||
| Mohsen Ahmadkhani | CCMNet, ACCESS CSSN | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Maryam Taeb | |||
| Nannan Shan | CCMNet, ACCESS CSSN | ||
| Paul Rulis | Campus Champions | ||
| Rebecca Belshe | Campus Champions, CCMNet | ||
| Russell Hofmann | ACCESS CSSN, CCMNet | ||
| Xiaoqin Huang | ACCESS CSSN | ||
| Swabir Silayi | ACCESS CSSN, CCMNet, Campus Champions | ||
| Simon Delattre | |||
| Soham Pal | ACCESS CSSN, Campus Champions, CCMNet | ||
| Sathish Srinivasan | ACCESS CSSN | ||
| William Lai | ACCESS CSSN |
Affinity Groups
There are no Affinity Groups associated with this topic. View All Affinity Groups.
Announcements
| Title | Date |
|---|---|
| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
| Ookami Webinar | 02/14/24 |
Upcoming Events & Trainings
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| Attention, Transformers, and LLMs: a hands-on introduction in Pytorch | Learning | ai, deep-learning, machine-learning, neural-networks, pytorch | Intermediate |
| DeepChem | Tool | pytorch, tensorflow, computational-chemistry | Beginner, Intermediate, Advanced |
| fast.ai | Website | ai, machine-learning, pytorch, training | Beginner, Intermediate, Advanced |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Expertise
Expertise
Expertise
People with Interest
Iman Rahbari
University of Southern California
Programs
Campus Champions, ACCESS CSSN
Roles
mentor, researcher/educator, research computing facilitator, research software engineer, cssn
Interests
Parameshwaran Pasupathy
Rutgers, the State University of New Jersey
Programs
ACCESS CSSN, CAREERS
Roles
student-facilitator
Interests
Paul Rulis
University of Missouri-Kansas City
Programs
Campus Champions
Roles
researcher/educator, research computing facilitator
