pytorch
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Devin Bayly | ACCESS CSSN, Campus Champions, CCMNet | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Bala Desinghu | ACCESS CSSN, Campus Champions, CAREERS, Northeast | ||
| Deborah Penchoff | Campus Champions | ||
| David Liu | CCMNet | ||
| Elie Alhajjar | ACCESS CSSN, CCMNet | ||
| Yu-Chieh Chi | Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jeffrey Weekley | Campus Champions | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Od Odbadrakh | ACCESS CSSN | ||
| Kenneth Bundy | CAREERS | ||
| shuai liu | ACCESS CSSN | ||
| Mohsen Ahmadkhani | CCMNet, ACCESS CSSN | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Maryam Taeb | |||
| Dr. Nabeel Alzahrani | Campus Champions, CCMNet | ||
| Nannan Shan | CCMNet, ACCESS CSSN | ||
| Paul Rulis | Campus Champions | ||
| Rebecca Belshe | Campus Champions, CCMNet | ||
| Russell Hofmann | ACCESS CSSN, CCMNet | ||
| Xiaoqin Huang | ACCESS CSSN | ||
| Swabir Silayi | ACCESS CSSN, CCMNet, Campus Champions | ||
| Simon Delattre | |||
| Soham Pal | ACCESS CSSN, Campus Champions, CCMNet | ||
| Sathish Srinivasan | ACCESS CSSN | ||
| William Lai | ACCESS CSSN |
Affinity Groups
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Announcements
| Title | Date |
|---|---|
| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
| Ookami Webinar | 02/14/24 |
Upcoming Events & Trainings
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| Attention, Transformers, and LLMs: a hands-on introduction in Pytorch | Learning | ai, deep-learning, machine-learning, neural-networks, pytorch | Intermediate |
| DeepChem | Tool | pytorch, tensorflow, computational-chemistry | Beginner, Intermediate, Advanced |
| fast.ai | Website | ai, machine-learning, pytorch, training | Beginner, Intermediate, Advanced |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Paul Rulis
University of Missouri-Kansas City
Programs
Campus Champions
Roles
researcher/educator, research computing facilitator
Expertise
Bala Desinghu
Harvard University
Programs
ACCESS CSSN, Campus Champions, CAREERS, Northeast
Roles
mentor, researcher/educator, research computing facilitator, cssn, Consultant
Expertise
Jeffrey Weekley
University of California - Santa Cruz
Programs
Campus Champions
Roles
research computing facilitator
Expertise
People with Interest
Feseha Abebe-Akele
Elizabeth City State University
Programs
CCMNet
Roles
mentor, researcher/educator, research computing facilitator, CCMNet
Interests
Shawn Sivy
The College of New Jersey
Programs
Campus Champions, CAREERS
Roles
research computing facilitator, ci systems engineer
Interests
Matthew Chung
University of California, Riverside
Programs
ACCESS CSSN, CCMNet
Roles
research computing facilitator, ci systems engineer, cssn, CCMNet